Give them a bit more time. Finally on Friday the transcript and counselor report was shown as received, but the two teacher recommendations are still not recorded as in.
I am guessing that they are prioritizing the application and supplement processing, to be sure that everyone is sent an ID, then they are digging out through the pile of other submissions.
I would take them at their word when they say that anyone who is missing something will be notified soon and given the time to correct the situation. No alert from them about a missing item means no worries.
Save the worrying for whether you will receive an acceptance.