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"I just went on a tour of the science facilities, which are recently built, so here's my input on that front.
Their science equipment and buildings are impressive for the size of university that they are, especially because their size means that these are open to undergraduates, which isn't the case even at UVA, where the expensive equipment is reserved for graduate students and research faculty (I also work in a UVA lab). GMU, on the other hand, didn't even have that level of equipment. Science majors are treated very well. One caveat: the science buildings are distanced from the others because they are new.
The old buildings are also very nice. THe bluestone ones in particular are pretty.
Given the choice between JMU and UVA, prices being equal, I'd lean heavily JMU for science. Partly because of what I've said already, and partly because UVA is full of cliques, rather preppy, and does not have a defined campus hardly at all...it's mixed in with Charlottesville. UVA might have a better science reputation, but keep in mind that it has graduate statistics skewing the picture.
On the downside with JMU, I really disagree with their course requirements.
In general, VA state schools are awesome. JMU is no exception."