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As a current UCSD student, I can say that it's often possible to get courses waived in that are not "articulated." You submit a petition to the department. I've had to do a few--though my circumstances are a little odd--and they've always been approved.
If that doesn't work, it doesn't necessarily mean that your friend is screwed. Even if the department won't accept the courses towards graduation, professors are usually very accommodating when it comes to pre-req satisfaction. If he wants to take a course that requires one of the courses he didn't get transfer credit for, but took something similar to at the community college, he should contact the professor and briefly explain the situation. Your friend should also, briefly, express confidence in what he learned and enthusiasm for the course. He'll almost surely be let in.
Also note that the whole lower division basic physics series is offered at UCSD during the summer session. So if he has to re-take these, he can take them over this or the next summer, if not during the school year.
And, yeah, as far as I can tell, the two year thing is not a terribly strict requirement.
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