Your daughter’s ECs are great and I wouldn’t worry about that piece.
To your original question, competitive schools want to see kids taking the most rigorous curriculum available to them. Some of your daughter’s APs are some of the very easiest and IMO, were unnecessary. Missing calc and physics is going to be a negative. I agree with everything posted by @skieurope. Bottom line, it’s a disadvantage.
I would consider taking AP physics instead of AP environmental science and AP calc instead of stats. Or, even honors or regular physics/calc.
I will also echo that overloading AP courses senior year is risky because of all the work that will need to go into the college application process.