Glad you are now healthy.
The great thing about med school is where you go matters little but your GPA, MCAT, shadowing and more will matter.
As an example, here are where the residents went for undergrad for departments at Vandy and Duke hospitals:
So - budget matters because your schools are near $100k but then you have four more years at $100k.
So something to think about.
You have a great profile - strong rigor etc.
Your GPA will change but it’s a bit low - so my guess is you’d go 0-4 but wouldn’t be surprised if one happened. Of course, as a Junior, you have a chance to increase it.
So you have Chicago, Emory, JHU and NYU. So you need ballast schools - meaning schools in the other side of the barbell. Assured admits, etc.
College of Charleston would be a safety for you with Honors. You have an outside shot at the Charleston Fellows which brings big money. It attracts Ivy student. The school is a few blocks from the Medical U of SC so opportunities could be there. It’s very urban.
Pitt would be bigger but it’s well regarded. It would be safe if you applied by Nov 1 - has rolling admissions.
Since you like NYU, why not GW? It’s a target.
U Denver would be a good fit if you’re open to the West. Rochester a nice but realistic reach, with an open curriculum and seriousness of Chicago. Brandeis is another - target. Syracuse another possibility. Down South, U Miami is possible.
Good luck.