You’re really asking two separate questions: “Does Stanford want AP’s?” and “Will the lack of Subject Tests hurt me?”
AP courses, and their corresponding exams, count toward course rigor. Subject Test scores count toward standardized testing. So will the lack od Subject Tests hurt you? Maybe. Maybe not. Will admissions overlook your lack of Subjects Tests simple because you have AP scores? No. One should assume that many applicants have both AP scores and Subject Tests.