Senior year high school transcript

Alright, so I’m taking three courses senior year-ap gov, ap lit, and anatomy honors including an another writing class

I haven’t went to school for the entire second quarter bcz of some problems at home… But I managed to get 94 gpa not including anatomy. Right now I have the option of keeping anatomy and ruining my second quarter gpa or withdrawing the class due to failure and keeping the 94 gpa. I applied to good schools like nyu and I dont know what to do. At the end of the year, I could fix my anatomy grade but it’d mess up my midyear report. So it’s really like choosing the best from the worst. Please let me know what to do…I’m a senior and I really dont want colleges to not accept me just bcz of this.